STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BFO_3155Sodium bile acid symporter family protein; Identified by match to protein family HMM PF01758. (298 aa)    
Predicted Functional Partners:
BFO_1679
Prephenate dehydrogenase; Identified by match to protein family HMM PF02153.
  
     0.685
BFO_2120
Hypothetical protein.
  
     0.672
BFO_2831
Hypothetical protein.
  
     0.669
BFO_3156
Glucosamine-6-phosphate deaminase-like protein; Identified by match to protein family HMM PF01182; match to protein family HMM PF02585.
       0.646
BFO_3157
Hypothetical protein; Identified by glimmer; putative.
       0.636
BFO_3159
Hypothetical protein.
 
     0.613
BFO_2796
Hypothetical protein.
  
     0.579
BFO_1365
Identified by match to protein family HMM PF07676.
  
     0.566
hup_1
DNA-binding protein HU; Identified by match to protein family HMM PF00216; overlaps another CDS with the same product name; Belongs to the bacterial histone-like protein family.
  
     0.559
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
       0.536
Your Current Organism:
Tannerella forsythia
NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2
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