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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BFO_3206Toprim domain protein. (465 aa)    
Predicted Functional Partners:
BFO_3205
Hypothetical protein.
       0.773
BFO_3223
Conjugative transposon protein TraO.
 
     0.757
BFO_3224
Conjugative transposon protein TraQ.
 
     0.652
BFO_3238
Identified by match to protein family HMM PF06966.
  
     0.642
BFO_1609
Hypothetical protein.
  
     0.620
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.598
BFO_3240
Hypothetical protein.
  
     0.595
BFO_3263
Hypothetical protein.
  
     0.592
BFO_1357
Identified by match to protein family HMM PF08843.
 
     0.576
BFO_1358
Hypothetical protein.
 
     0.561
Your Current Organism:
Tannerella forsythia
NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2
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