STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BFO_3208Putative flagellar protein FliS. (756 aa)    
Predicted Functional Partners:
BFO_3209
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
       0.555
BFO_1041
Putative membrane protein.
  
     0.539
BFO_0746
Hypothetical protein.
  
     0.535
BFO_1718
TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR04056; match to protein family HMM TIGR04057.
  
     0.532
BFO_2600
TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR04056; match to protein family HMM TIGR04057.
  
     0.524
BFO_2970
TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR04056; match to protein family HMM TIGR04057.
  
     0.523
BFO_0499
TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR04056; match to protein family HMM TIGR04057.
  
     0.520
BFO_0333
TonB-dependent receptor; Identified by match to protein family HMM PF03544; match to protein family HMM PF05569; match to protein family HMM TIGR01352.
 
   0.494
BFO_2107
TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR04056; match to protein family HMM TIGR04057.
  
     0.487
BFO_0033
TonB-linked outer membrane protein, SusC/RagA family; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR04056; match to protein family HMM TIGR04057.
  
    0.476
Your Current Organism:
Tannerella forsythia
NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2
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