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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BFO_3209Radical SAM domain protein; Identified by match to protein family HMM PF04055. (459 aa)    
Predicted Functional Partners:
BFO_0060
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
  
     0.772
BFO_0100
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
  
     0.762
BFO_0052
Hypothetical protein.
  
     0.645
BFO_3208
Putative flagellar protein FliS.
       0.552
BFO_3210
Hypothetical protein; Identified by glimmer; putative.
       0.457
BFO_2290
Arylsulfatase; Identified by match to protein family HMM PF00884.
 
   0.412
BFO_1151
Arylsulfatase; Identified by match to protein family HMM PF00884.
 
   0.406
Your Current Organism:
Tannerella forsythia
NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2
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