STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BFO_3288PASTA domain protein; Identified by match to protein family HMM PF03793. (222 aa)    
Predicted Functional Partners:
BFO_2977
FHA domain protein; Identified by match to protein family HMM PF00498.
   
 
 0.857
BFO_3289
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
  
    0.823
ddl
D-ala D-ala ligase N-terminal domain protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
     
 0.785
BFO_0399
Hypothetical protein.
 
  
 0.682
rpmH
Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family.
     
 0.650
BFO_0827
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103.
  
     0.641
BFO_3026
Hypothetical protein.
  
     0.624
BFO_3291
Acyltransferase family protein.
       0.607
BFO_0487
Hypothetical protein.
 
     0.593
BFO_2612
Hypothetical protein.
  
     0.583
Your Current Organism:
Tannerella forsythia
NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.