BFO_3306 protein (Tannerella forsythia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BFO_3306

Hypothetical protein. (207 aa)

Predicted Functional Partners:

BFO_1631

0.753

BFO_1186

0.748

BFO_1442

0.737

BFO_0792

0.735

BFO_2979

0.729

BFO_3307

0.718

BFO_2977

0.713

BFO_2565

0.710

BFO_0012

0.699

BFO_1013

0.699

Your Current Organism:

Tannerella forsythia

NCBI taxonomy Id: 203275
Other names: T. forsythia 92A2, Tannerella forsythia 92A2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
BFO_0012	BFO_0792	Hypothetical protein.	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	0.536
BFO_0012	BFO_1013	Hypothetical protein.	Hypothetical protein.	0.442
BFO_0012	BFO_1186	Hypothetical protein.	Putative membrane protein.	0.771
BFO_0012	BFO_1442	Hypothetical protein.	Putative lipoprotein.	0.774
BFO_0012	BFO_1631	Hypothetical protein.	Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.	0.731
BFO_0012	BFO_2565	Hypothetical protein.	Hypothetical protein.	0.717
BFO_0012	BFO_2977	Hypothetical protein.	FHA domain protein; Identified by match to protein family HMM PF00498.	0.628
BFO_0012	BFO_2979	Hypothetical protein.	FHA domain protein; Identified by match to protein family HMM PF00498.	0.773
BFO_0012	BFO_3306	Hypothetical protein.	Hypothetical protein.	0.699
BFO_0792	BFO_0012	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	Hypothetical protein.	0.536
BFO_0792	BFO_1013	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	Hypothetical protein.	0.667
BFO_0792	BFO_1186	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	Putative membrane protein.	0.732
BFO_0792	BFO_1442	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	Putative lipoprotein.	0.653
BFO_0792	BFO_1631	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943.	0.736
BFO_0792	BFO_2565	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	Hypothetical protein.	0.687
BFO_0792	BFO_2977	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	FHA domain protein; Identified by match to protein family HMM PF00498.	0.657
BFO_0792	BFO_2979	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	FHA domain protein; Identified by match to protein family HMM PF00498.	0.641
BFO_0792	BFO_3306	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	Hypothetical protein.	0.735
BFO_1013	BFO_0012	Hypothetical protein.	Hypothetical protein.	0.442
BFO_1013	BFO_0792	Hypothetical protein.	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	0.667