STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMI79_21730Phosphotyrosine protein phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (115 aa)    
Predicted Functional Partners:
BMI79_21725
Uncharacterized protein.
       0.782
BMI79_13195
Nucleotidyltransferase.
  
     0.591
BMI79_13205
Transcriptional regulator.
  
     0.476
BMI79_17300
Transposase.
  
     0.422
BMI79_11800
Cell envelope integrity protein CreD.
  
     0.410
BMI79_10615
R2K_3 domain-containing protein.
  
     0.406
BMI79_17095
Poly(A) polymerase.
  
     0.402
BMI79_13200
RNA-splicing ligase RtcB.
 
     0.401
Your Current Organism:
Serratia oryzae
NCBI taxonomy Id: 2034155
Other names: ACCC 19934, KCTC 52529, Rahnella sp. J11-6, S. oryzae, Serratia oryzae Zhang et al. 2017, strain J11-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.