STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KIQ10797.1Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)    
Predicted Functional Partners:
KIQ10796.1
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.953
KIQ10795.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.905
KIQ10794.1
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.830
KIQ10793.1
Dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.793
KIQ10798.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.780
KIQ10792.1
Triosephosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.759
KIQ02469.1
Dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.633
KIQ02467.1
Triosephosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.616
KIQ02516.1
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.568
KIQ10477.1
Dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.563
Your Current Organism:
Curtobacterium flaccumfaciens
NCBI taxonomy Id: 2035
Other names: Bacterium flaccumfaciens, Bacterium poinsettiae, C. flaccumfaciens, CIP 107085, Corynebacterium betae, Corynebacterium flaccumfaciens, Corynebacterium flaccumfaciens subsp. betae, Corynebacterium flaccumfaciens subsp. flaccumfaciens, Corynebacterium flaccumfaciens subsp. oortii, Corynebacterium flaccumfaciens subsp. poinsettiae, Corynebacterium oortii, Curtibacterium flaccumfaciens, ICMP 2584, JCM 9670, LMG 3645, LMG:3645, Phytomonas flaccumfaciens, Phytomonas poinsettiae, Pseudomonas flaccumfaciens
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