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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALX03293.1Acetamidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)    
Predicted Functional Partners:
ALX03294.1
glutamyl-tRNA amidotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family.
  
 0.981
ALX03300.1
Hydantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.765
ALX03299.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.703
ALX03292.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.686
ALX03302.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.592
ALX03297.1
Urate oxidase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
     
 0.559
ALX03298.1
Allantoicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.558
ALX03291.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.546
ALX03303.1
Aldehyde oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.543
ALX03295.1
OHCU decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.529
Your Current Organism:
Aeromicrobium erythreum
NCBI taxonomy Id: 2041
Other names: A. erythreum, ATCC 51598, DSM 8599, JCM 8359, LMG 16472, LMG:16472, NBRC 15406, NRRL B-3381
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