ALX03310.1 protein (Aeromicrobium erythreum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Aeromicrobium erythreum

NCBI taxonomy Id: 2041
Other names: A. erythreum, ATCC 51598, DSM 8599, JCM 8359, LMG 16472, LMG:16472, NBRC 15406, NRRL B-3381

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALX03306.1	ALX03307.1	AERYTH_00615	AERYTH_00620	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
ALX03306.1	ALX03308.1	AERYTH_00615	AERYTH_00625	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
ALX03306.1	ALX03309.1	AERYTH_00615	AERYTH_00630	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
ALX03306.1	ALX03310.1	AERYTH_00615	AERYTH_00635	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
ALX03306.1	ALX04769.1	AERYTH_00615	AERYTH_08700	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Siroheme synthase CysG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
ALX03307.1	ALX03306.1	AERYTH_00620	AERYTH_00615	Nitrate ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
ALX03307.1	ALX03308.1	AERYTH_00620	AERYTH_00625	Nitrate ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
ALX03307.1	ALX03309.1	AERYTH_00620	AERYTH_00630	Nitrate ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
ALX03307.1	ALX03310.1	AERYTH_00620	AERYTH_00635	Nitrate ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
ALX03308.1	ALX03306.1	AERYTH_00625	AERYTH_00615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
ALX03308.1	ALX03307.1	AERYTH_00625	AERYTH_00620	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
ALX03308.1	ALX03309.1	AERYTH_00625	AERYTH_00630	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
ALX03308.1	ALX03310.1	AERYTH_00625	AERYTH_00635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
ALX03309.1	ALX03306.1	AERYTH_00630	AERYTH_00615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
ALX03309.1	ALX03307.1	AERYTH_00630	AERYTH_00620	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
ALX03309.1	ALX03308.1	AERYTH_00630	AERYTH_00625	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
ALX03309.1	ALX03310.1	AERYTH_00630	AERYTH_00635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
ALX03310.1	ALX03306.1	AERYTH_00635	AERYTH_00615	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
ALX03310.1	ALX03307.1	AERYTH_00635	AERYTH_00620	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
ALX03310.1	ALX03308.1	AERYTH_00635	AERYTH_00625	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499