Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALX03455.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)    
Predicted Functional Partners:
eryAII
EryAII acyl transferase domain in polyketide synthase (PKS); Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.831
ALX03980.1
3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.824
ALX03479.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
 0.803
ALX03454.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
ALX03456.1
Rho termination factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.693
ALX06076.1
EryAIII acyl transferase domain in polyketide synthase (PKS).
  
 
 0.690
ALX03461.1
Molecular chaperone GroES; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.571
ALX03453.1
Cation-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.553
ALX03457.1
Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.537
ALX04033.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.517
Your Current Organism:
Aeromicrobium erythreum
NCBI taxonomy Id: 2041
Other names: A. erythreum, ATCC 51598, DSM 8599, JCM 8359, LMG 16472, LMG:16472, NBRC 15406, NRRL B-3381
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