ALX03682.1 protein (Aeromicrobium erythreum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Aeromicrobium erythreum

NCBI taxonomy Id: 2041
Other names: A. erythreum, ATCC 51598, DSM 8599, JCM 8359, LMG 16472, LMG:16472, NBRC 15406, NRRL B-3381

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALX03209.1	ALX03682.1	AERYTH_00095	AERYTH_02685	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Malonic semialdehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
ALX03209.1	ALX04532.1	AERYTH_00095	AERYTH_07420	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
ALX03209.1	ALX04890.1	AERYTH_00095	AERYTH_09360	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
ALX03682.1	ALX03209.1	AERYTH_02685	AERYTH_00095	Malonic semialdehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
ALX03682.1	ALX04532.1	AERYTH_02685	AERYTH_07420	Malonic semialdehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
ALX03682.1	ALX04827.1	AERYTH_02685	AERYTH_09010	Malonic semialdehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.415
ALX03682.1	ALX04890.1	AERYTH_02685	AERYTH_09360	Malonic semialdehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
ALX03682.1	ALX04954.1	AERYTH_02685	AERYTH_09695	Malonic semialdehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.712
ALX03682.1	ALX05068.1	AERYTH_02685	AERYTH_10330	Malonic semialdehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
ALX03682.1	ALX05092.1	AERYTH_02685	AERYTH_10470	Malonic semialdehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
ALX03682.1	cobB	AERYTH_02685	AERYTH_14620	Malonic semialdehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	CobB cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	0.441
ALX04532.1	ALX03209.1	AERYTH_07420	AERYTH_00095	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
ALX04532.1	ALX03682.1	AERYTH_07420	AERYTH_02685	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Malonic semialdehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
ALX04532.1	ALX04890.1	AERYTH_07420	AERYTH_09360	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.485
ALX04532.1	ALX05092.1	AERYTH_07420	AERYTH_10470	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
ALX04827.1	ALX03682.1	AERYTH_09010	AERYTH_02685	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	Malonic semialdehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
ALX04827.1	ALX05068.1	AERYTH_09010	AERYTH_10330	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
ALX04827.1	cobB	AERYTH_09010	AERYTH_14620	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	CobB cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	0.594
ALX04890.1	ALX03209.1	AERYTH_09360	AERYTH_00095	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
ALX04890.1	ALX03682.1	AERYTH_09360	AERYTH_02685	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Malonic semialdehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455