ALX03986.1 protein (Aeromicrobium erythreum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Aeromicrobium erythreum

NCBI taxonomy Id: 2041
Other names: A. erythreum, ATCC 51598, DSM 8599, JCM 8359, LMG 16472, LMG:16472, NBRC 15406, NRRL B-3381

Export your current network:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALX03259.1	ALX03980.1	AERYTH_00365	AERYTH_04330	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
ALX03259.1	ALX03986.1	AERYTH_00365	AERYTH_04360	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	propionyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
ALX03259.1	ALX03987.1	AERYTH_00365	AERYTH_04365	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
ALX03259.1	ALX04085.1	AERYTH_00365	AERYTH_04920	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
ALX03259.1	ALX04086.1	AERYTH_00365	AERYTH_04925	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
ALX03259.1	ALX04419.1	AERYTH_00365	AERYTH_06805	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643
ALX03259.1	ALX05783.1	AERYTH_00365	AERYTH_14315	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA carboxyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
ALX03259.1	ALX06076.1	AERYTH_00365	AERYTH_15910	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	EryAIII acyl transferase domain in polyketide synthase (PKS).	0.599
ALX03980.1	ALX03259.1	AERYTH_04330	AERYTH_00365	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
ALX03980.1	ALX03986.1	AERYTH_04330	AERYTH_04360	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	propionyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
ALX03980.1	ALX03987.1	AERYTH_04330	AERYTH_04365	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
ALX03980.1	ALX04079.1	AERYTH_04330	AERYTH_04890	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ALX03980.1	ALX04085.1	AERYTH_04330	AERYTH_04920	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA carboxyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
ALX03980.1	ALX04086.1	AERYTH_04330	AERYTH_04925	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
ALX03980.1	ALX05783.1	AERYTH_04330	AERYTH_14315	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA carboxyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ALX03980.1	ALX06076.1	AERYTH_04330	AERYTH_15910	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	EryAIII acyl transferase domain in polyketide synthase (PKS).	0.999
ALX03980.1	ALX06146.1	AERYTH_04330	AERYTH_16295	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ALX03986.1	ALX03259.1	AERYTH_04360	AERYTH_00365	propionyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
ALX03986.1	ALX03980.1	AERYTH_04360	AERYTH_04330	propionyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.856
ALX03986.1	ALX03987.1	AERYTH_04360	AERYTH_04365	propionyl-CoA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878