manB protein (Aeromicrobium erythreum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Aeromicrobium erythreum

NCBI taxonomy Id: 2041
Other names: A. erythreum, ATCC 51598, DSM 8599, JCM 8359, LMG 16472, LMG:16472, NBRC 15406, NRRL B-3381

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALX03980.1	ALX05475.1	AERYTH_04330	AERYTH_12600	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
ALX03980.1	ahcY	AERYTH_04330	AERYTH_05040	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.448
ALX03980.1	manB	AERYTH_04330	AERYTH_05035	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphomannomutase; Converts mannose-6-phosphate to mannose-1-phosphate; the resulting product is then converted to GDP-mannose by ManC which is then used in the synthesis of mannose-containing glycoconjugates that are important for mediating entry into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
ALX04105.1	ALX04106.1	AERYTH_05025	AERYTH_05030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643
ALX04105.1	ahcY	AERYTH_05025	AERYTH_05040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.403
ALX04105.1	manB	AERYTH_05025	AERYTH_05035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphomannomutase; Converts mannose-6-phosphate to mannose-1-phosphate; the resulting product is then converted to GDP-mannose by ManC which is then used in the synthesis of mannose-containing glycoconjugates that are important for mediating entry into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643
ALX04106.1	ALX04105.1	AERYTH_05030	AERYTH_05025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643
ALX04106.1	ahcY	AERYTH_05030	AERYTH_05040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.	0.559
ALX04106.1	manB	AERYTH_05030	AERYTH_05035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphomannomutase; Converts mannose-6-phosphate to mannose-1-phosphate; the resulting product is then converted to GDP-mannose by ManC which is then used in the synthesis of mannose-containing glycoconjugates that are important for mediating entry into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.825
ALX04226.1	manB	AERYTH_05680	AERYTH_05035	Succinyl-diaminopimelate desuccinylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphomannomutase; Converts mannose-6-phosphate to mannose-1-phosphate; the resulting product is then converted to GDP-mannose by ManC which is then used in the synthesis of mannose-containing glycoconjugates that are important for mediating entry into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
ALX05444.1	ALX05766.1	AERYTH_12425	AERYTH_14215	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
ALX05444.1	manB	AERYTH_12425	AERYTH_05035	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphomannomutase; Converts mannose-6-phosphate to mannose-1-phosphate; the resulting product is then converted to GDP-mannose by ManC which is then used in the synthesis of mannose-containing glycoconjugates that are important for mediating entry into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.601
ALX05475.1	ALX03980.1	AERYTH_12600	AERYTH_04330	Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
ALX05475.1	ALX05766.1	AERYTH_12600	AERYTH_14215	Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933
ALX05475.1	ALX05768.1	AERYTH_12600	AERYTH_14225	Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
ALX05475.1	ALX06245.1	AERYTH_12600	AERYTH_16850	Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
ALX05475.1	manB	AERYTH_12600	AERYTH_05035	Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphomannomutase; Converts mannose-6-phosphate to mannose-1-phosphate; the resulting product is then converted to GDP-mannose by ManC which is then used in the synthesis of mannose-containing glycoconjugates that are important for mediating entry into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
ALX05766.1	ALX05444.1	AERYTH_14215	AERYTH_12425	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
ALX05766.1	ALX05475.1	AERYTH_14215	AERYTH_12600	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933
ALX05766.1	manB	AERYTH_14215	AERYTH_05035	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphomannomutase; Converts mannose-6-phosphate to mannose-1-phosphate; the resulting product is then converted to GDP-mannose by ManC which is then used in the synthesis of mannose-containing glycoconjugates that are important for mediating entry into host cells; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964