ALX04696.1 protein (Aeromicrobium erythreum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Aeromicrobium erythreum

NCBI taxonomy Id: 2041
Other names: A. erythreum, ATCC 51598, DSM 8599, JCM 8359, LMG 16472, LMG:16472, NBRC 15406, NRRL B-3381

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALX03766.1	ALX04279.1	AERYTH_03130	AERYTH_05960	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
ALX03766.1	ALX04695.1	AERYTH_03130	AERYTH_08315	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
ALX03766.1	ALX04696.1	AERYTH_03130	AERYTH_08320	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
ALX04279.1	ALX03766.1	AERYTH_05960	AERYTH_03130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
ALX04279.1	ALX04695.1	AERYTH_05960	AERYTH_08315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
ALX04279.1	ALX04696.1	AERYTH_05960	AERYTH_08320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
ALX04693.1	ALX04695.1	AERYTH_08305	AERYTH_08315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
ALX04693.1	ALX04696.1	AERYTH_08305	AERYTH_08320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
ALX04693.1	ALX04697.1	AERYTH_08305	AERYTH_08325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
ALX04693.1	ALX04705.1	AERYTH_08305	AERYTH_08365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	rRNA cytosine-C5-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.438
ALX04693.1	ALX05931.1	AERYTH_08305	AERYTH_15095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
ALX04695.1	ALX03766.1	AERYTH_08315	AERYTH_03130	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
ALX04695.1	ALX04279.1	AERYTH_08315	AERYTH_05960	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
ALX04695.1	ALX04693.1	AERYTH_08315	AERYTH_08305	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
ALX04695.1	ALX04696.1	AERYTH_08315	AERYTH_08320	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
ALX04695.1	ALX04697.1	AERYTH_08315	AERYTH_08325	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.867
ALX04695.1	ALX04698.1	AERYTH_08315	AERYTH_08330	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.479
ALX04695.1	ALX04705.1	AERYTH_08315	AERYTH_08365	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	rRNA cytosine-C5-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.578
ALX04695.1	ALX05318.1	AERYTH_08315	AERYTH_11705	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
ALX04696.1	ALX03766.1	AERYTH_08320	AERYTH_03130	Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.	uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409