ALX04735.1 protein (Aeromicrobium erythreum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Aeromicrobium erythreum

NCBI taxonomy Id: 2041
Other names: A. erythreum, ATCC 51598, DSM 8599, JCM 8359, LMG 16472, LMG:16472, NBRC 15406, NRRL B-3381

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALX04729.1	ALX04732.1	AERYTH_08490	AERYTH_08505	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ALX04729.1	ALX04733.1	AERYTH_08490	AERYTH_08510	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.616
ALX04729.1	ALX04734.1	AERYTH_08490	AERYTH_08515	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Peptidase M1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
ALX04729.1	ALX04735.1	AERYTH_08490	AERYTH_08520	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	3-methyladenine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA glycosylase MPG family.	0.667
ALX04729.1	argB	AERYTH_08490	AERYTH_08480	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	0.992
ALX04729.1	argC	AERYTH_08490	AERYTH_08470	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	0.992
ALX04729.1	argD	AERYTH_08490	AERYTH_08485	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Acetylornithine aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	0.991
ALX04729.1	argH	AERYTH_08490	AERYTH_08500	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ALX04729.1	argJ	AERYTH_08490	AERYTH_08475	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	N-acetylglutamate synthase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	0.998
ALX04729.1	argR	AERYTH_08490	AERYTH_08495	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Arginine repressor; Regulates arginine biosynthesis genes.	0.981
ALX04732.1	ALX04729.1	AERYTH_08505	AERYTH_08490	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.773
ALX04732.1	ALX04733.1	AERYTH_08505	AERYTH_08510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
ALX04732.1	ALX04734.1	AERYTH_08505	AERYTH_08515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
ALX04732.1	ALX04735.1	AERYTH_08505	AERYTH_08520	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-methyladenine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA glycosylase MPG family.	0.576
ALX04732.1	argB	AERYTH_08505	AERYTH_08480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	0.675
ALX04732.1	argC	AERYTH_08505	AERYTH_08470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	0.665
ALX04732.1	argD	AERYTH_08505	AERYTH_08485	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetylornithine aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.	0.773
ALX04732.1	argH	AERYTH_08505	AERYTH_08500	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
ALX04732.1	argJ	AERYTH_08505	AERYTH_08475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-acetylglutamate synthase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	0.665
ALX04732.1	argR	AERYTH_08505	AERYTH_08495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine repressor; Regulates arginine biosynthesis genes.	0.773