Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ALX04890.1ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)    
Predicted Functional Partners:
ALX04889.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.962
ALX04891.1
Cytochrome oxidase assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.939
ALX04888.1
ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.558
ALX04681.1
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.523
ALX06076.1
EryAIII acyl transferase domain in polyketide synthase (PKS).
  
  
 0.492
ALX05093.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.491
ALX04532.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.485
ALX04533.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.484
ALX05092.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.478
ALX03208.1
Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.476
Your Current Organism:
Aeromicrobium erythreum
NCBI taxonomy Id: 2041
Other names: A. erythreum, ATCC 51598, DSM 8599, JCM 8359, LMG 16472, LMG:16472, NBRC 15406, NRRL B-3381
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