STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_00409Glyco_hydro_3 domain-containing protein. (569 aa)    
Predicted Functional Partners:
C824_00407
Beta-phosphoglucomutase.
      0.769
C824_01764
Uncharacterized protein.
     0.637
C824_01767
Uncharacterized protein.
 
     0.517
C824_00432
Uncharacterized protein.
  
     0.501
C824_03665
Cellulase domain-containing protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.473
C824_04185
NLPC_P60 domain-containing protein.
  
  
 0.463
C824_04263
Uncharacterized protein.
  
  
 0.463
C824_04437
Uncharacterized protein.
  
  
 0.463
C824_01214
Aamy domain-containing protein; Belongs to the glycosyl hydrolase 13 family.
  
 
  0.450
C824_05343
Bac_rhamnosid6H domain-containing protein.
  
     0.445
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.