STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_01240HTH deoR-type domain-containing protein. (285 aa)    
Predicted Functional Partners:
pfkB
Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.867
pfkB-2
Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.851
C824_01238
PfkB domain-containing protein; Belongs to the carbohydrate kinase PfkB family.
  
 
  0.498
C824_04347
Uncharacterized protein.
  
  
 0.490
C824_02867
RpiB/LacA/LacB family sugar-phosphate isomerase.
  
 
 0.452
C824_04927
Glycerol-3-phosphate dehydrogenase, anaerobic, A subunit.
 
  
 0.451
C824_02685
PTS system, glucose subfamily, IIA component.
 
  
 0.447
C824_04225
Ribose 5-phosphate isomerase B.
  
 
 0.446
C824_01239
Aldo/keto reductase.
       0.431
C824_04908
5-deoxy-glucuronate isomerase.
  
  
 0.425
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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