STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_01598YlmC/YmxH family sporulation protein. (84 aa)    
Predicted Functional Partners:
C824_05588
SpoVA/SpoVAEb family sporulation membrane protein.
  
    0.809
C824_03336
Sigma-E processing peptidase SpoIIGA.
 
     0.806
sigE
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.799
sigG
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.790
C824_01221
Stage II sporulation protein R.
 
     0.787
C824_00443
Stage IV sporulation protein A.
 
     0.770
C824_02145
Stage III sporulation protein AG.
  
     0.768
C824_02143
Stage III sporulation protein AE.
  
     0.764
C824_05587
Stage V sporulation protein AD.
  
    0.764
C824_02139
Stage III sporulation protein AA.
  
    0.762
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.