STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_02143Stage III sporulation protein AE. (444 aa)    
Predicted Functional Partners:
C824_02142
Stage III sporulation protein AD.
 
  
 0.995
C824_02145
Stage III sporulation protein AG.
 
  
 0.974
C824_02140
Stage III sporulation protein AB.
 
  
 0.973
spoIIIAC
Stage III sporulation protein AC.
 
  
 0.972
C824_02139
Stage III sporulation protein AA.
 
  
 0.968
C824_02146
Uncharacterized protein.
 
  
 0.964
C824_02144
Stage III sporulation protein AF.
  
  
 0.961
C824_02076
Stage II sporulation protein P.
  
   
 0.839
C824_00443
Stage IV sporulation protein A.
  
  
 0.814
C824_02047
Stage 0 sporulation protein A homolog; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
 
   
 0.797
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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