STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_02225Polysacc_synt_C domain-containing protein. (557 aa)    
Predicted Functional Partners:
C824_05456
UPF0297 protein C824_05456; Belongs to the UPF0297 family.
  
     0.721
mreD
Rod shape-determining protein MreD.
 
    0.668
C824_03100
Uncharacterized protein.
  
     0.642
ybeY
Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.635
C824_02121
50S ribosomal protein L7ae.
  
     0.617
C824_01757
ATP-dependent helicase/deoxyribonuclease subunit B; ATP-dependent DNA helicase.
  
     0.610
C824_02226
Uncharacterized protein.
       0.586
C824_02235
Uncharacterized protein.
 
     0.571
whiA
Probable cell division protein WhiA; Involved in cell division and chromosome segregation.
  
     0.566
C824_02227
UPF0291 protein C824_02227.
       0.559
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.