STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_02628Citrate synthase; Belongs to the citrate synthase family. (456 aa)    
Predicted Functional Partners:
C824_03585
Aconitate hydratase 1.
 
 0.994
C824_03141
Pyruvate:ferredoxin (Flavodoxin) oxidoreductase.
  
 0.969
C824_03059
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
 
 
 0.960
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 0.949
ldh-2
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 0.949
C824_04326
Hydrolyase, tartrate alpha subunit/fumarate domain-containing protein, Fe-S type.
  
 
 0.932
C824_05429
Phosphoenolpyruvate phosphomutase.
  
 0.931
C824_04325
Hydrolyase, tartrate beta subunit/fumarate domain-containing protein, Fe-S type.
  
 
 0.920
C824_01725
Lipoyl-binding domain-containing protein.
  
 0.908
C824_05643
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.897
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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