STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_03484SpoIID/LytB domain-containing protein. (432 aa)    
Predicted Functional Partners:
C824_00443
Stage IV sporulation protein A.
  
  
 0.914
C824_02139
Stage III sporulation protein AA.
  
  
 0.850
C824_02076
Stage II sporulation protein P.
  
  
 0.844
C824_00993
Serine/threonine protein phosphatase.
 
   
 0.839
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
   
 0.827
C824_05594
Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
   
 0.815
C824_03336
Sigma-E processing peptidase SpoIIGA.
  
   
 0.791
C824_01221
Stage II sporulation protein R.
  
   
 0.780
C824_02222
Sporulation protein YqfD.
  
  
 0.780
C824_02046
Stage IV sporulation protein B.
  
   
 0.768
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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