STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_03546Lactamase_B domain-containing protein. (264 aa)    
Predicted Functional Partners:
C824_03547
HD-GYP domain-containing protein.
     0.972
C824_03545
Guanylate cyclase domain-containing protein.
 
     0.945
C824_03548
FecR domain-containing protein.
       0.709
C824_03544
Uncharacterized protein.
       0.581
C824_03549
Uncharacterized protein.
       0.515
C824_03550
Uncharacterized protein.
       0.515
C824_01814
Uncharacterized protein.
 
     0.499
C824_01486
Diguanylate cyclase (GGDEF) domain-containing protein.
  
     0.451
C824_01254
Diguanylate cyclase (GGDEF) domain-containing protein.
  
     0.415
C824_00436
Diguanylate cyclase (GGDEF) domain-containing protein.
  
     0.405
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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