STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_04613Thioredoxin domain-containing protein. (188 aa)    
Predicted Functional Partners:
C824_04612
DsbD domain-containing protein.
 
 
 
 0.962
C824_01010
Pyr_redox_2 domain-containing protein.
  
 0.907
C824_01067
Thioredoxin reductase.
  
 0.907
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.777
C824_04609
Arsenate reductase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
 
 0.758
C824_04614
Uncharacterized protein.
     
 0.738
C824_02051
Methylmalonyl-CoA mutase domain-containing protein.
    
 0.716
C824_00835
Uncharacterized protein.
  
 
 0.700
C824_01674
Uncharacterized protein.
  
 
 0.691
C824_04611
Redox-active disulfide protein 2.
 
  
 0.691
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.