STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_048734-carboxymuconolactone decarboxylase. (122 aa)    
Predicted Functional Partners:
C824_03141
Pyruvate:ferredoxin (Flavodoxin) oxidoreductase.
  
 
  0.873
C824_04872
MerR family transcriptional regulator.
 
     0.771
C824_00259
Uncharacterized protein.
  
 
  0.596
C824_04539
2-hydroxy-3-oxopropionate reductase.
  
 
  0.596
C824_01837
HTH merR-type domain-containing protein.
 
     0.595
C824_01327
Uncharacterized protein.
  
  
 
0.530
C824_02519
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.525
C824_02293
AB hydrolase-1 domain-containing protein.
  
 
 0.455
C824_05474
AB hydrolase-1 domain-containing protein.
  
 
 0.455
C824_01328
Cupin_2 domain-containing protein.
 
  
 0.413
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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