STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_04917Beta-galactosidase. (1061 aa)    
Predicted Functional Partners:
C824_05547
Alpha-L-AF_C domain-containing protein.
 
  
 0.757
C824_00262
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.752
C824_02435
Alpha-L-AF_C domain-containing protein.
 
  
 0.722
C824_05763
L-ribulose-5-phosphate 4-epimerase.
   
 
  0.661
C824_04916
Sugar (Glycoside-Pentoside-Hexuronide) transporter.
 
    0.634
C824_04920
Uncharacterized protein.
   
  
 0.616
C824_01603
Aldo/keto reductase.
   
 
  0.605
C824_04918
HTH araC/xylS-type domain-containing protein.
 
     0.602
C824_00814
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.581
C824_05303
Mannose-6-phosphate isomerase, class I.
    
 0.574
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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