STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_04933HTH lacI-type domain-containing protein. (332 aa)    
Predicted Functional Partners:
C824_05300
HTH lacI-type domain-containing protein.
  
     0.774
C824_04964
HTH lacI-type domain-containing protein.
  
     0.773
C824_05489
HTH-type transcriptional repressor purR.
  
     0.772
C824_02685
PTS system, glucose subfamily, IIA component.
    
 0.751
C824_04934
VOC domain-containing protein.
       0.727
C824_04830
HTH gntR-type domain-containing protein.
  
     0.655
C824_04914
LacI family DNA-binding transcriptional regulator.
  
 
  0.522
C824_04932
Dihydrodipicolinate synthase; Belongs to the DapA family.
 
     0.474
C824_01378
Uncharacterized protein; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.471
C824_04931
Uncharacterized protein.
 
     0.470
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.