STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_04950Uncharacterized protein; Belongs to the binding-protein-dependent transport system permease family. (351 aa)    
Predicted Functional Partners:
C824_04951
Simple sugar transport system ATP-binding protein.
  0.980
C824_04949
Simple sugar transport system permease; Belongs to the binding-protein-dependent transport system permease family.
  
 
0.962
C824_04952
Simple sugar transport system substrate-binding protein.
 
 0.951
C824_02841
Peripla_BP_4 domain-containing protein.
 0.941
C824_04832
Uncharacterized protein.
  0.881
C824_01380
Peripla_BP_4 domain-containing protein.
 
 0.880
C824_02516
Peripla_BP_4 domain-containing protein.
 0.855
C824_01933
Peripla_BP_4 domain-containing protein.
 
  0.818
C824_05385
Uncharacterized protein.
  0.797
rbsA
Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  0.794
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.