STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_05146GFO_IDH_MocA domain-containing protein. (322 aa)    
Predicted Functional Partners:
C824_05147
GFO_IDH_MocA domain-containing protein.
 
     0.949
C824_05148
Uncharacterized protein.
 
    0.942
C824_05149
LLPSF_family NAD dependent epimerase/dehydratase.
 
 
  0.871
C824_05150
LLPSF_NHT_00031 family aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
  0.832
C824_05145
UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing.
 
 
  0.803
C824_05151
Uncharacterized protein.
 
    0.763
C824_05320
Uncharacterized protein.
 
    0.751
C824_05328
N-acetyl sugar amidotransferase.
  
    0.695
C824_05144
N-acetylneuraminate synthase.
 
     0.674
C824_05142
Uncharacterized protein.
 
    0.614
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.