STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_05195Pseudaminic acid biosynthesis N-acetyl transferase. (182 aa)    
Predicted Functional Partners:
C824_05450
Pseudaminic acid biosynthesis-associated protein PseG.
 
 
 0.835
C824_03141
Pyruvate:ferredoxin (Flavodoxin) oxidoreductase.
    
  0.825
C824_05182
Pseudaminic acid synthase.
 
 
 0.775
C824_05180
Uncharacterized protein.
 
 
  0.772
C824_05187
UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
  0.735
C824_00091
Chorismate mutase.
    
  0.672
C824_05178
UDP-N-acetylglucosamine 4,6-dehydratase.
 
     0.628
C824_05193
Uncharacterized protein.
  
    0.617
C824_05194
BcrAD_BadFG domain-containing protein.
  
    0.617
aroK-2
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
    
  0.616
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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