STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_05372Uncharacterized protein. (258 aa)    
Predicted Functional Partners:
C824_05370
ABC transporter domain-containing protein.
 
 0.989
C824_05371
Cobalt/nickel transport system ATP-binding protein.
 
 0.989
C824_01073
ABC transporter domain-containing protein.
 
 0.954
C824_00087
Biotin transporter.
  
 0.948
C824_05373
Uncharacterized protein.
 
     0.946
C824_00611
Uncharacterized protein.
 
 0.944
C824_01074
Cobalt/nickel transport system ATP-binding protein.
 
 0.943
ecfA-2
Energy-coupling factor transporter ATP-binding protein EcfA; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 0.922
C824_01341
Cobalamin biosynthesis protein CbiM.
  
 0.878
C824_05259
TIGR04002 family protein.
  
 
 0.862
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.