STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_05380Uncharacterized protein. (505 aa)    
Predicted Functional Partners:
C824_05763
L-ribulose-5-phosphate 4-epimerase.
  
 
 0.774
C824_00497
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.701
C824_01955
Uncharacterized protein.
 
  
 0.687
C824_00859
Uncharacterized protein.
    
  0.672
C824_01234
Ribulose-phosphate 3-epimerase.
    
 0.623
C824_04927
Glycerol-3-phosphate dehydrogenase, anaerobic, A subunit.
 
  
 0.611
C824_05382
Uncharacterized protein.
 
 
  0.607
C824_05381
Uncharacterized protein.
       0.590
C824_00851
L-ribulose-5-phosphate 4-epimerase.
  
 
 0.578
C824_01701
RDD domain-containing protein.
  
  
 0.560
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.