STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_05622GntR family transcriptional regulator. (124 aa)    
Predicted Functional Partners:
C824_05621
ABC transporter domain-containing protein.
    0.940
C824_05719
ABC transporter domain-containing protein.
    0.741
C824_00312
ABC transporter ATP-binding protein.
    0.712
C824_03861
ABC transporter domain-containing protein.
    0.709
C824_03123
ABC transporter domain-containing protein.
    0.673
C824_01295
ABC transporter ATP-binding protein.
    0.641
C824_05880
ABC transporter ATP-binding protein.
    0.633
C824_02329
ABC transporter domain-containing protein.
    0.617
C824_05519
HTH gntR-type domain-containing protein.
  
     0.600
C824_05620
Uncharacterized protein.
  
    0.509
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.