STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C824_05681HTH arsR-type domain-containing protein. (180 aa)    
Predicted Functional Partners:
C824_05678
Uncharacterized protein.
 
     0.814
C824_05679
ABC transporter domain-containing protein.
 
     0.749
C824_05680
PLDc_N domain-containing protein.
 
     0.733
C824_04773
Uncharacterized protein.
  
    0.610
C824_02840
Hydrolase CocE/NonD family protein.
  
     0.554
C824_02839
Uncharacterized protein.
  
     0.545
C824_01779
MFS domain-containing protein.
 
    0.485
C824_01697
Uncharacterized protein.
  
     0.467
C824_02078
Heavy metal translocating P-type ATPase.
  
  
 0.456
C824_06030
HTH tetR-type domain-containing protein.
  
     0.442
Your Current Organism:
Schaedlerella arabinosiphila
NCBI taxonomy Id: 2044587
Other names: Clostridiaceae bacterium DSM 106076, Clostridiales bacterium TLL-A1, Clostridium sp. ASF502, DSM 106076, KCTC 15657, S. arabinosiphila, Schaedlerella arabinosiphila Soh et al. 2019, personal::TLL-A1T, strain TLL-A1T
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.