STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppFOligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (318 aa)    
Predicted Functional Partners:
dppC
Putative glutathione transporter, permease component.
  
 0.993
AIY19309.1
Dipeptide transport system permease protein DppC.
  
 0.985
AIY20207.2
Dipeptide transport system permease protein DppC.
  
 0.984
AIY19830.2
Oligopeptide transport system permease protein OppC.
  
 0.982
AIY19627.2
Putative glutathione transporter, permease component.
 
 0.969
AIY20018.2
Dipeptide transport system permease protein DppC.
  
 0.967
AIY20178.2
Putative ABC transporter, permease.
  
 0.960
AIY19952.2
Oligopeptide transport integral membrane protein.
  
 0.952
AIY15698.2
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA.
  
 0.907
AIY19913.2
Oligopeptide transport integral membrane protein.
  
 0.881
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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