STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY15720.2Putative sulfite oxidase. (468 aa)    
Predicted Functional Partners:
AIY15717.1
Hypothetical protein.
 
     0.807
AIY15719.1
Putative lipoprotein.
 
     0.744
rpoE_12
RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.673
AIY19862.2
Ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit.
   
 
 0.615
AIY19761.2
Non-ribosomal peptide synthetase, terminal component.
  
   
 0.551
AIY19633.2
Amine oxidase, flavin-containing.
       0.505
AJR17997.1
Serine/threonine protein kinase.
       0.472
AIY17268.1
Hypothetical protein.
  
   0.463
AIY19632.2
Hypothetical protein.
       0.435
cfa
Cyclopropane-fatty-acyl-phospholipid synthase.
       0.435
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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