STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY15768.1Desferrioxamine E biosynthesis protein DesD, Siderophore synthetase superfamily, group C, Siderophore synthetase component, ligase. (755 aa)    
Predicted Functional Partners:
AIY15767.1
Siderophore biosynthesis protein, monooxygenase.
  
 0.983
AJR18012.1
Pyridoxal-dependent decarboxylase; Desferrioxamine E biosynthesis protein DesA, Siderophore biosynthesis L-2,4-diaminobutyrate decarboxylase.
 
  
 0.964
AIY15770.1
Acetyltransferase; Desferrioxamine E biosynthesis protein DesC, Siderophore synthetase small component, acetyltransferase.
 
  
0.916
AIY15769.1
Penicillin amidase family protein.
 
     0.894
AIY17975.1
Ferrichrome ABC transporter.
 
  
 0.550
AJR18011.1
Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2; Belongs to the methyltransferase superfamily.
       0.542
AIY19645.2
Nitrate/nitrite transporter.
     
 0.529
tatC
Twin-arginine translocation protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
      
 0.402
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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