STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR18062.1Transcriptional regulator. (411 aa)    
Predicted Functional Partners:
AJR18414.1
Putative regulatory protein.
 
     0.732
AIY18980.1
Cys-tRNA(Pro) deacylase YbaK.
  
     0.665
AIY19777.2
Transcriptional regulator.
 
     0.621
pucR
Putative regulatory protein.
  
     0.572
AIY15920.2
Glycolate dehydrogenase, subunit GlcD.
       0.560
AIY15921.1
Amino acid ABC transporter, ATP-binding protein.
     
 0.520
AIY15922.1
Amino acid ABC transporter binding protein and permease protein.
     
 0.514
AJR18063.1
ABC transporter permease protein.
     
 0.514
AJR18064.1
Amino acid ABC transporter, amino acid-binding/permease protein.
     
 0.513
AIY17265.1
Regulatory protein.
  
     0.493
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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