STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY16240.1Transcriptional regulator, GntR family. (218 aa)    
Predicted Functional Partners:
mdcY
Transcriptional regulator, GntR family.
 
  
 0.784
AIY19269.1
Transcriptional regulator, GntR family.
 
  
 0.773
AJR18762.1
Transcriptional regulator, GntR family.
 
  
 0.715
AJR18621.1
Transcriptional regulator, GntR family.
 
  
 0.681
AIY19716.2
Putative integral membrane transporter.
       0.580
AIY18889.1
Putative transcriptional regulator of N-Acetylglucosamine utilization, GntR family.
  
  
 0.510
dasR
Putative transcriptional regulator of N-Acetylglucosamine utilization, GntR family.
  
  
 0.506
accD_1
Acetyl-coenzyme A carboxyl transferase alpha chain.
  
  
 0.453
accD_2
Acetyl-coenzyme A carboxyl transferase alpha chain.
  
  
 0.453
AJR18799.1
Transcriptional regulator, GntR family.
 
  
0.402
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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