STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY16408.1Thioredoxin reductase. (563 aa)    
Predicted Functional Partners:
trx
Thioredoxin; Belongs to the thioredoxin family.
  
 0.951
trxB_2
Thioredoxin reductase.
  
  
 
0.918
csd
Cysteine desulfurase, SufS subfamily; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.910
selD
Selenide,water dikinase; Synthesizes selenophosphate from selenide and ATP.
     
 0.906
AIY17936.1
Isopeptidase T.
 
  
 0.701
AIY16407.1
Gluconate transporter family protein.
     
 0.672
AIY16406.2
Gluconokinase.
       0.665
AIY16410.1
Hypothetical protein.
     
 0.658
AIY16409.2
Hemerythrin HHE cation binding domain protein.
       0.645
AIY18188.2
Thioredoxin domain-containing protein EC-YbbN.
  
 
 0.528
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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