Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AIY16479.1 | AIY16480.1 | KR76_06350 | KR76_06355 | Glycine oxidase ThiO. | Sulfur carrier protein ThiS, Opine oxidase subunit C. | 0.912 |
AIY16479.1 | AIY16483.2 | KR76_06350 | KR76_06370 | Glycine oxidase ThiO. | Hydroxymethylpyrimidine phosphate kinase ThiD. | 0.850 |
AIY16479.1 | AIY16900.1 | KR76_06350 | KR76_09250 | Glycine oxidase ThiO. | Sulfur carrier protein adenylyltransferase ThiF. | 0.450 |
AIY16479.1 | thiC | KR76_06350 | KR76_06375 | Glycine oxidase ThiO. | Hydroxymethylpyrimidine phosphate synthase ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.650 |
AIY16479.1 | thiE_2 | KR76_06350 | KR76_06345 | Glycine oxidase ThiO. | Thiamin-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.889 |
AIY16479.1 | thiG | KR76_06350 | KR76_06360 | Glycine oxidase ThiO. | Thiazole biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.999 |
AIY16479.1 | thiL | KR76_06350 | KR76_18400 | Glycine oxidase ThiO. | Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.710 |
AIY16480.1 | AIY16479.1 | KR76_06355 | KR76_06350 | Sulfur carrier protein ThiS, Opine oxidase subunit C. | Glycine oxidase ThiO. | 0.912 |
AIY16480.1 | AIY16483.2 | KR76_06355 | KR76_06370 | Sulfur carrier protein ThiS, Opine oxidase subunit C. | Hydroxymethylpyrimidine phosphate kinase ThiD. | 0.865 |
AIY16480.1 | AIY16900.1 | KR76_06355 | KR76_09250 | Sulfur carrier protein ThiS, Opine oxidase subunit C. | Sulfur carrier protein adenylyltransferase ThiF. | 0.874 |
AIY16480.1 | AIY19494.1 | KR76_06355 | KR76_26920 | Sulfur carrier protein ThiS, Opine oxidase subunit C. | Hypothetical protein. | 0.834 |
AIY16480.1 | fbiC | KR76_06355 | KR76_06880 | Sulfur carrier protein ThiS, Opine oxidase subunit C. | 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1. | 0.760 |
AIY16480.1 | thiC | KR76_06355 | KR76_06375 | Sulfur carrier protein ThiS, Opine oxidase subunit C. | Hydroxymethylpyrimidine phosphate synthase ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.875 |
AIY16480.1 | thiE_2 | KR76_06355 | KR76_06345 | Sulfur carrier protein ThiS, Opine oxidase subunit C. | Thiamin-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.952 |
AIY16480.1 | thiG | KR76_06355 | KR76_06360 | Sulfur carrier protein ThiS, Opine oxidase subunit C. | Thiazole biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.997 |
AIY16483.2 | AIY16479.1 | KR76_06370 | KR76_06350 | Hydroxymethylpyrimidine phosphate kinase ThiD. | Glycine oxidase ThiO. | 0.850 |
AIY16483.2 | AIY16480.1 | KR76_06370 | KR76_06355 | Hydroxymethylpyrimidine phosphate kinase ThiD. | Sulfur carrier protein ThiS, Opine oxidase subunit C. | 0.865 |
AIY16483.2 | AIY16900.1 | KR76_06370 | KR76_09250 | Hydroxymethylpyrimidine phosphate kinase ThiD. | Sulfur carrier protein adenylyltransferase ThiF. | 0.761 |
AIY16483.2 | AIY19494.1 | KR76_06370 | KR76_26920 | Hydroxymethylpyrimidine phosphate kinase ThiD. | Hypothetical protein. | 0.680 |
AIY16483.2 | fbiC | KR76_06370 | KR76_06880 | Hydroxymethylpyrimidine phosphate kinase ThiD. | 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1. | 0.504 |
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