STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY16566.1Two-component system sensor kinase. (437 aa)    
Predicted Functional Partners:
AIY16567.1
Putative two-component system response regulator.
 
 
 0.976
AIY16565.1
PspC domain protein.
 
  
0.838
AIY19004.2
Two-component hybrid sensor and regulator.
  
 
 0.810
AIY19772.2
Hypothetical protein.
       0.773
AIY16568.1
Putative integral membrane protein.
       0.739
AIY19119.1
Putative membrane protein.
  
  
 0.721
AIY19107.1
Hypothetical protein.
  
  
 0.620
AJR18332.1
Putative secreted/membrane protein.
  
     0.602
AJR18641.1
Two component sensor kinase.
 
  
 0.599
AIY16757.1
Putative two-component system sensor kinase.
 
  
 0.577
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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