STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJR18195.1Putative RNA polymerase ECF-subfamily sigma factor. (647 aa)    
Predicted Functional Partners:
AJR18196.1
Putative membrane protein related to de Novo purine biosynthesis.
 
     0.768
AIY20107.2
Putative integral membrane protein.
 
     0.762
AIY19595.1
Putative membrane protein.
 
 
   0.750
AIY20109.2
Hypothetical protein.
  
     0.726
AIY18119.2
Coagulation factor 5/8 type-like.
  
     0.718
AIY19701.2
ErfK/YbiS/YcfS/YnhG family protein.
 
  
 0.709
AIY19330.1
Cys-tRNA(Pro) deacylase YbaK.
  
    0.690
AIY18748.1
Hypothetical protein.
  
   
 0.689
AIY18170.1
Putative secreted protein.
  
     0.674
AIY18939.1
Carboxylesterase type B.
  
  
 0.670
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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