STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY16703.1Flp pilus assembly protein TadB. (273 aa)    
Predicted Functional Partners:
AIY19788.2
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily.
  
 0.978
AIY16706.1
Putative membrane protein.
 
  
 0.969
AIY16704.1
Type II/IV secretion system protein TadC, associated with Flp pilus assembly.
 
     0.954
AIY16707.1
Hypothetical protein.
 
     0.947
AJR18227.1
Type II secretion system protein E.
  
 0.891
AIY16705.1
Hypothetical protein.
 
     0.863
AIY16880.1
Flagellar synthesis regulator FleN.
 
     0.781
AJR18277.1
Hypothetical protein.
 
    0.780
AIY16708.1
Hypothetical protein.
     
 0.775
AIY16879.1
Excisionase/Xis, DNA-binding.
  
     0.771
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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