STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY16707.1Hypothetical protein. (152 aa)    
Predicted Functional Partners:
AIY16706.1
Putative membrane protein.
 
     0.959
AIY16704.1
Type II/IV secretion system protein TadC, associated with Flp pilus assembly.
 
     0.949
AIY16703.1
Flp pilus assembly protein TadB.
 
     0.947
AIY19788.2
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily.
 
     0.859
AIY16705.1
Hypothetical protein.
 
     0.818
AIY16708.1
Hypothetical protein.
       0.806
AIY16880.1
Flagellar synthesis regulator FleN.
  
     0.769
AIY16709.2
Hypothetical protein.
       0.768
AJR18277.1
Hypothetical protein.
  
     0.731
AIY16879.1
Excisionase/Xis, DNA-binding.
  
     0.689
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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