STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY16817.1UbiE/COQ5 methyltransferase. (235 aa)    
Predicted Functional Partners:
AIY16815.1
ABC transporter (iron.B12.siderophore.hemin), periplasmic substrate-binding component.
 
 
   0.907
AIY16816.1
ABC transporter (iron.B12.siderophore.hemin), ATP-binding component.
   
 0.857
AIY16818.1
Dihydrofolate synthase, Folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family.
     
 0.756
AIY19801.2
Membrane protein.
       0.746
AJR18260.1
ABC transporter (iron.B12.siderophore.hemin), permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
 0.741
AJR18080.1
Methyltransferase.
  
     0.642
secA
Protein export cytoplasm protein SecA ATPase RNA helicase; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
  
    0.591
AJR18259.1
Glycoside hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
  
    0.477
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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