Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
AIY17041.1Putative dehydrogenase. (324 aa)    
Predicted Functional Partners:
AIY17040.2
NAD-dependent malic enzyme.
     
 0.728
AIY17039.2
Putative phage repressor.
       0.705
AIY17055.1
Putative oxidoreductase.
  
     0.656
AIY19145.2
ABC-type Fe3+-hydroxamate transport system, periplasmic component.
  
   
 0.501
sodN_1
Nickel-dependent superoxide dismutase.
       0.497
AIY19849.2
Multidrug resistance protein B; Belongs to the major facilitator superfamily.
       0.404
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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