STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIY17312.1Transcriptional regulator, TetR family. (202 aa)    
Predicted Functional Partners:
lig_1
ATP-dependent DNA ligase.
       0.773
AIY17313.1
DNA glycosylase.
       0.542
AIY16544.1
Transcriptional regulator, TetR family.
  
     0.525
AIY15723.1
Transcriptional regulator, TetR family.
  
  
 0.497
AIY18104.1
Hypothetical protein.
 
    0.457
AIY16657.1
Transcriptional regulator, TetR family.
  
     0.445
AIY17314.1
SCP-2 sterol transfer family protein.
       0.429
AIY17315.1
Conserved hypothetical integral membrane protein YrbEA.
       0.429
AIY19889.2
Conserved hypothetical integral membrane protein YrbEB.
       0.429
AJR18379.1
MCE-family protein MceA.
       0.429
Your Current Organism:
Pimelobacter simplex
NCBI taxonomy Id: 2045
Other names: ATCC 6946, Arthrobacter simplex, CCUG 23611, CIP 82.106, Corynebacterium simplex, DSM 20130, HAMBI 90, IFO 12069, KCTC 9106, LMG 16261, LMG:16261, NBRC 12069, NCIB 8929, NCIB:8929, Nocardioides simplex, P. simplex
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